SBML Layout Viewer

Original Size | Scaled x2 | 640x480 | 1024x768 | SVG Export (experimental)

NEW: provided by sbml2tikz: TikZ Export | PDF Export

Auto Layout options

Here you can change all layout options. After a change press layout again.

Gravity:
Edge Length:
Missing Reactant / Product:

Other options: Use Magnetism Use Boundary Use Grid

About the layout viewer

This site takes an SBML File and renders it according to the SBML Layout Extension, or the JDesigner annotations.An experimental support for CellDesigner Model annotations (Annotation Version 2.5) has been added.

November 2007: The Render Extension used has been updated, so it would support also the render extension as proposed by the Eml Team. The advantage for visitors to this website is, that now the full rendering is available as SVG (Previously only the Layout (positions & dimensions) were available as SVG).

Update: The Layout algorithm used on this site has now been published: Supporting the SBML layout extension Anastasia Deckard; Frank T. Bergmann; Herbert M. Sauro, Bioinformatics 2006; doi: 10.1093/bioinformatics/btl520 Read more here: Full Article

5/28/2010: The Layout viewer web application has been updated to also export the layout information in TikZ format. For this the open source converter sbml2tikz is used as library.

10/30/2011: Launch of the new layout application, featuring support for multiple files.

Overwrite Rendering with SBGN Stylesheet
Visualize Layout \| Download SBML